• 06.09.2016
  • Annonce
  • Forum Recherche génétique

Bringing artificial enzymes closer to nature

A ruthenium-based artificial metalloenzyme catalyses a new-to-nature olefin metathesis reaction in the bacterium E. coli.
Image: NCCR Molecular Systems Engineering
A ruthenium-based artificial metalloenzyme catalyses a new-to-nature olefin metathesis reaction in the bacterium E. coli.
A ruthenium-based artificial metalloenzyme catalyses a new-to-nature olefin metathesis reaction in the bacterium E. coli. (Image: NCCR Molecular Systems Engineering)

Swiss scientists have developed an artificial enzyme that catalyses a reaction inside of cells without equivalent in nature. This could be a prime example for creating new non-natural metabolic pathways inside living cells.

Expanding the repertoire of natural enzymes

“The goal was to create an artificial metalloenzyme that can catalyse olefin metathesis, a reaction mechanism that is not present among natural enzymes,” says Thomas R Ward, Professor at the Department of Chemistry, University of Basel, and senior author of the study. The olefin metathesis reaction is a method for the formation and redistribution of carbon-carbon double bonds widely used in laboratory research and large-scale industrial productions of various chemical products. The artificial enzyme, termed Biot-Ru–SAV, catalyses a ring-closing metathesis to produce a fluorescent molecule for easy detection and quantification.

Biot-Ru–SAV, was created using the biotin–streptavidin technology. This method relies on the high affinity of the protein streptavidin for the vitamin biotin, where compounds bound to biotin can be introduced into the protein to generate artificial enzymes. In this study the authors introduced an organometallic compound, with the metal ruthenium at its base. Organometallic compounds are molecules containing at least one bond between a metal and a carbon atom, and are often used as catalysts in industrial chemical reactions. However, organometallic catalysts perform poorly, if at all, in aqueous solutions or cellular-like environments, and need to be incorporated into protein scaffolds like streptavidin to overcome these limitations.

Periplasm as reaction compartment

However, the environment inside a living cell is far from ideal for the proper functioning of organometallic-based enzymes. “The main breakthrough was the idea to use the periplasm of Escherichia coli as a reaction compartment, whose environment is much better suited for an olefin metathesis catalyst,” says Markus Jeschek, a researcher at the ETH Zurich in Basel. The periplasm, the space between the inner and the outer membrane in gram-negative bacteria, contains low concentrations of metalloenzymes inhibitors, such as glutathione.

Optimizing the enzyme further

Having found ideal in vivo conditions, the authors went a step forward and decided to optimize biot-Ru–SAV by applying principles of directed evolution, a method that mimics the process of natural selection to evolve proteins with enhanced properties or activities. “We could then develop a simple and robust screening method that allowed us to test thousands of biot-Ru–SAV mutants and identify the most active variant,” Ward explains.

Not only could the authors markedly improve the catalytic properties of biot-Ru–SAV, but they could also show that organometallic-based enzymes can be engineered and optimized for different substrates, thus producing a variety of different chemical products. “The exciting thing about this is that artificial metalloenzymes like biot-Ru–SAV can be used to produce novel high added-value chemicals,” Ward says. “It has a lot of potential to combine both chemical and biological tools to ultimately utilize cells as molecular factories.”

Source: Adapted from a press release from the University of Basel.
Image: NCCR Molecular Systems Engineering.



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Biologie synthétique

La biologie synthétique a pour but de concevoir et développer des systèmes biologiques tels qu’ils n’existent pas dans la nature ou à reconstruire, en les modifiant, des systèmes existants. Elle constitue un secteur de recherche relativement nouveau qui se situe au carrefour de différentes disciplines dont la biologie moléculaire et l’ingénierie. La biologie synthétique a le potentiel d’apporter des solutions nouvelles à divers domaines tels que la médecine, la production d’énergie ou celle de denrées alimentaires. Le développement de cette technologie soulève néanmoins des questions relatives à l’éthique, aux risques et à la sécurité.